PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g001940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 448aa    MW: 50453.8 Da    PI: 9.2228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g001940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++C++ F r  nL+ H r+H
  Csa06g001940.1 73 YICEICNQGFQRDQNLQMHRRRH 95
                    89********************9 PP

2zf-C2H214.50.0001151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k +  +s++k H++t+
  Csa06g001940.1 151 WVCERCSKGYAVQSDYKAHLKTC 173
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-57096No hitNo description
Gene3DG3DSA:3.30.160.601.3E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00657395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8667395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355160115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4142172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100151178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV  60
SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDNNIEV KKRVYVCPEP  120
TCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC  180
DCGRVFSRVE SFIEHQDNCS VRRVHREQPL PPQTAVPVPA CSSRTASTIS TPSSETNYGS  240
AIAVATPIPL EGRPIHQRIS PSVLTHSSKN LNLELQLLPL SSNQNPNHQE NRQQKVKEPS  300
HHHNHNHDAT NLNLSIAPSS SSYQHYNNFD RIKEIMASEQ IMKIAMKEKD YAEEAKREAK  360
RQREIAENEF ANAKKIRQKA QAELERAKFL KEQSMKKISS TIMQITCQTC KGQFQAVAVP  420
AAATDETSLV VSFMSSANTD GDFENGF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2267030.0AK226703.1 Arabidopsis thaliana mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL07-61-I21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513938.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
RefseqXP_010513939.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2
SwissprotF4IPE30.0IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLR0FNK10.0R0FNK1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__108__AT2G01940.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.10.0C2H2-like zinc finger protein